PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00084.29
Common NameAMTR_s00084p00111010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 203aa    MW: 22521.7 Da    PI: 4.7975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00084.29genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000762183955
                                             TCHHHHHHHHHHHHHHH CS
                                      HLH 39 sKaeiLekAveYIksLq 55
                                             + a+iL  A+eY+k+Lq
  evm_27.model.AmTr_v1.0_scaffold00084.29  2 DRASILDDAIEYVKELQ 18
                                             679*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-7134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.67E-5132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDRASILDDA IEYVKELQML MKALQEELDV TTEEEQQQGN GGDGGAPLAT TPSSDSNNHG  60
DFSVMGERVQ VEVNQVGAHE FNLKIFCEKS SGGFARLMQA MDALGLEVIH VNITTYMSLV  120
LNVFKVEVCL RKDTTYMSLV LNVFKVEMRD NEAIQIEHVR DSLLKLTRNP NGWPSPVPKL  180
QHVHLRELLP PIGATNFSST HI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837855.12e-85PREDICTED: transcription factor ABORTED MICROSPORES
RefseqXP_011621271.12e-85PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBLW1NXG81e-150W1NXG8_AMBTC; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-29bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]